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Solution structure of the aminoacyl-capped oligodeoxyribonucleotide duplex TRP-D(TGCGCAC)2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 4 MM TRP-TGCGCAC IN 150 MM NACL AND 10 MM PHOSPHATE BUFFER (KH2PO4/K2HPO4) AT PH 7.0 (UNCORRECTED FOR DEUTERIUM EFFECT) 160 mM 7 AMBIENT 283 2 DQF-COSY 4 MM TRP-TGCGCAC IN 150 MM NACL AND 10 MM PHOSPHATE BUFFER (KH2PO4/K2HPO4) AT PH 7.0 (UNCORRECTED FOR DEUTERIUM EFFECT) 160 mM 7 AMBIENT 283 3 TOCSY 4 MM TRP-TGCGCAC IN 150 MM NACL AND 10 MM PHOSPHATE BUFFER (KH2PO4/K2HPO4) AT PH 7.0 (UNCORRECTED FOR DEUTERIUM EFFECT) 160 mM 7 AMBIENT 283 4 2D NOESY 4 MM TRP-TGCGCAC IN 150 MM NACL AND 10 MM PHOSPHATE BUFFER (KH2PO4/K2HPO4) AT PH 7.0 (UNCORRECTED FOR DEUTERIUM EFFECT) 160 mM 7 AMBIENT 283 5 4 MM TRP-TGCGCAC IN 150 MM NACL AND 10 MM PHOSPHATE BUFFER (KH2PO4/K2HPO4) AT PH 7.0 (UNCORRECTED FOR DEUTERIUM EFFECT) 160 mM 7 AMBIENT 283
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 MIT-BUILT 500 2 MIT-BUILT 750 3 Bruker DRX 600 4 Bruker DPX 300
NMR Refinement Method Details Software TORSION-ANGLE MOLECULAR DYNAMICS FOLLOWED BY CARTESIAN MOLECULAR DYNAMICS SEE TABLE 5 IN PAPER RNMR
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details CONSTRAINTS WERE GENERATED USING STANDARD 2D HOMONUCLEAR TECHNIQUES.
Computation: NMR Software # Classification Version Software Name Author 1 collection RNMR 1998 RUBEN, D. ET AL. (MIT BITTER LABS) 2 collection XwinNMR 1998 BRUKER 3 data analysis Gifa 4.10 MARC-ANDRE' DELSUC, MONTPELLIER, FRANCE 4 structure solution CNS 0.4 BRUENGER, A.; GROSSE-KUNSTLEVE, R.W. ET AL.; YALE UNIVERSITY 5 refinement X-PLOR 3.1 BRUENGER, A., ET AL. YALE UNIVERSITY