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BACTERIORHODOPSIN D96N LATE M STATE INTERMEDIATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C3W PDB ENTRY 1C3W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 CUBIC LIPID PHASE 5.6 296 MO:WATER:PHOSPHATE, pH 5.6, CUBIC LIPID PHASE, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.68 54.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.631 α = 90 b = 60.631 β = 90 c = 108.156 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC M SINGLE WAVELENGTH 2 1 x-ray CCD MAR CCD M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2 2 SYNCHROTRON ESRF BEAMLINE ID13 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 25 95 0.069 19.2 7.6 14622
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.03 98.1 0.33 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS THROUGHOUT PDB ENTRY 1C3W 2 12 14622 734 95 0.173 0.172 0.219 THIN RESOLUTION SHELLS
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.261 s_non_zero_chiral_vol 0.032 s_zero_chiral_vol 0.031 s_angle_d 0.021 s_anti_bump_dis_restr 0.016 s_bond_d 0.007 s_similar_dist s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1510 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 297
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling