1BJM

LOC NAKS, A LAMBDA 1 TYPE LIGHT-CHAIN DIMER (BENCE-JONES PROTEIN) CRYSTALLIZED IN NAKSO4


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthew coefficientSolvent content
2.1242.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.87α = 90
b = 72.62β = 90
c = 63.56γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.225.618459

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.21031408476.30.158
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor25.4
p_orthonormal_tor18.9
p_planar_tor2.6
p_scangle_it1.913
p_mcangle_it1.598
p_scbond_it1.18
p_mcbond_it0.889
p_multtor_nbd0.313
p_xhyhbond_nbd0.307
p_singtor_nbd0.219
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor25.4
p_orthonormal_tor18.9
p_planar_tor2.6
p_scangle_it1.913
p_mcangle_it1.598
p_scbond_it1.18
p_mcbond_it0.889
p_multtor_nbd0.313
p_xhyhbond_nbd0.307
p_singtor_nbd0.219
p_chiral_restr0.193
p_planar_d0.057
p_angle_d0.043
p_bond_d0.017
p_plane_restr0.014
p_xyhbond_nbd
p_hb_or_metal_coord
p_angle_deg
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3196
Nucleic Acid Atoms
Solvent Atoms298
Heterogen Atoms

Software

Software
Software NamePurpose
X-PLORmodel building
PROLSQrefinement
X-PLORrefinement
X-PLORphasing