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CYTOCHROME BC1 COMPLEX FROM BOVINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BE3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 pH 6.8
Crystal Properties Matthews coefficient Solvent content 3.6 61.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.11 α = 90 b = 130.11 β = 90 c = 720.94 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1996-08-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID2 ESRF ID2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 40 81.9 0.92 8.9 3.9 111672 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.11 27.9 0.24 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 1BE3 3 20 101111 2022 74 0.32 0.36 RANDOM 30
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 31.4 p_staggered_tor 26.7 p_planar_tor 6.2 p_scangle_it 4.437 p_scbond_it 3.033 p_mcangle_it 2.68 p_mcbond_it 1.736 p_multtor_nbd 0.3 p_xyhbond_nbd 0.233 p_singtor_nbd 0.222
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 31.4 p_staggered_tor 26.7 p_planar_tor 6.2 p_scangle_it 4.437 p_scbond_it 3.033 p_mcangle_it 2.68 p_mcbond_it 1.736 p_multtor_nbd 0.3 p_xyhbond_nbd 0.233 p_singtor_nbd 0.222 p_chiral_restr 0.141 p_planar_d 0.05 p_angle_d 0.043 p_plane_restr 0.0249 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31468 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 262
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement