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Histidine ammonia-lyase (HAL) from Pseudomonas putida
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other HISTIDASE IN SPACE GROUP P21 (NOT DEPOSITED)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.1 CRYSTALLIZED FROM 2.0 M (NH4)2SO4, 1 % GLYCEROL, 2 % PEG 400, 0.1 M HEPES AT pH 8.1. 20 % (V/V) GLYCEROL WERE USED AS CRYOPROTECTANT
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.267 α = 90 b = 116.788 β = 90 c = 129.532 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR SIEMENS 1998-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 39 83 8.2 7.9 2.9 28972 15.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 66 18.2 3 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT HISTIDASE IN SPACE GROUP P21 (NOT DEPOSITED) 2.1 39 28972 28972 1485 83 0.197 0.187 0.1942 0.263 22.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 37.4 p_staggered_tor 19.5 p_planar_tor 8.3 p_scangle_it 2.3 p_mcangle_it 2.05 p_scbond_it 1.61 p_special_tor 1.5 p_mcbond_it 1.39 p_multtor_nbd 0.265 p_singtor_nbd 0.18
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 37.4 p_staggered_tor 19.5 p_planar_tor 8.3 p_scangle_it 2.3 p_mcangle_it 2.05 p_scbond_it 1.61 p_special_tor 1.5 p_mcbond_it 1.39 p_multtor_nbd 0.265 p_singtor_nbd 0.18 p_xyhbond_nbd 0.143 p_chiral_restr 0.119 p_planar_d 0.058 p_angle_d 0.024 p_plane_restr 0.0223 p_bond_d 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3762 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 11
Software Software Software Name Purpose AMoRE phasing REFMAC refinement XDS data reduction CCP4 data scaling