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BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PRELIMINARY COORDINATE OF T4 GP45 FROM J. KURIYAN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 16-18% PEG 8000, 0.2 M CA ACETATE PH7.5
Crystal Properties Matthews coefficient Solvent content 2.8 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.9 α = 90 b = 87.6 β = 90 c = 138.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC SILICON 111 BENDING MIRROR 1997-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 94.9 0.07 6.6 3.2 47361 2 15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PRELIMINARY COORDINATE OF T4 GP45 FROM J. KURIYAN 2.1 20 45020 4506 94.9 0.225 0.225 0.269 0.2687 RANDOM 32.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.12 1.85 -4.96
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.7 x_scangle_it 1.32 x_angle_deg 1.3 x_mcangle_it 0.97 x_scbond_it 0.85 x_improper_angle_d 0.65 x_mcbond_it 0.54 x_bond_d 0.006 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.7 x_scangle_it 1.32 x_angle_deg 1.3 x_mcangle_it 0.97 x_scbond_it 0.85 x_improper_angle_d 0.65 x_mcbond_it 0.54 x_bond_d 0.006 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5298 Nucleic Acid Atoms Solvent Atoms 713 Heterogen Atoms
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing