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3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE THYMIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
NOESY
6.8
298
2
COSY
6.8
298
3
DQF-COSY
6.8
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AM
500
2
Bruker
AMX
600
NMR Refinement
Method
Details
Software
RESTRAINED MOLECULAR DYNAMICS SIMULATIONS
REFINEMENT DETAILS CAN BE FOUND IN BIOCHEMISTRY VOL 35, NO. 41, 1996 PP 13319-
13327
X-PLOR
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
2
Conformers Submitted Total Number
2
Additional NMR Experimental Information
Details
THE STRUCTURE WAS DETERMINED USING 2D PROTON NMR FOLLOWED BY DISTANCE
RESTRAINED MOLECULAR DYNAMICS SIMULATIONS, AND FURTHER REFINED USING THE FULL
RELAXATION MATRIX BACK CALCULATION APPROACH.