1B5J

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KQK


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5pH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.4545

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.926α = 90
b = 75.446β = 90
c = 70.061γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATERIGAKUMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.81593.80.07566.75458722.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.966.70.3212.32.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTPDB ENTRY 1OLB1.81554578256393.80.1820.22725.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29
p_staggered_tor15.3
p_scangle_it4.204
p_planar_tor3.6
p_scbond_it3.136
p_mcangle_it2.931
p_mcbond_it2.383
p_multtor_nbd0.248
p_singtor_nbd0.176
p_xyhbond_nbd0.124
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29
p_staggered_tor15.3
p_scangle_it4.204
p_planar_tor3.6
p_scbond_it3.136
p_mcangle_it2.931
p_mcbond_it2.383
p_multtor_nbd0.248
p_singtor_nbd0.176
p_xyhbond_nbd0.124
p_planar_d0.029
p_angle_d0.027
p_bond_d0.011
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4201
Nucleic Acid Atoms
Solvent Atoms460
Heterogen Atoms8

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CCP4model building
REFMACrefinement
CCP4phasing