1B4H

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-DIAMINOBUTYRIC ACID-LYSINE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5pH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.4750.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.722α = 90
b = 75.953β = 90
c = 70.424γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92099.80.115.34.647784

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.920453544535499.80.190.23random19.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor14.1
p_planar_tor3.7
p_scangle_it2.484
p_mcangle_it1.935
p_scbond_it1.674
p_mcbond_it1.371
p_multtor_nbd0.247
p_singtor_nbd0.176
p_xyhbond_nbd0.136
p_planar_d0.032
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor14.1
p_planar_tor3.7
p_scangle_it2.484
p_mcangle_it1.935
p_scbond_it1.674
p_mcbond_it1.371
p_multtor_nbd0.247
p_singtor_nbd0.176
p_xyhbond_nbd0.136
p_planar_d0.032
p_angle_d0.029
p_bond_d0.012
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4198
Nucleic Acid Atoms
Solvent Atoms373
Heterogen Atoms8

Software

Software
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
REFMACrefinement
CCP4data scaling