X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BRSPDB ENTRY 1BRS

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17pH 7.0
Crystal Properties
Matthews coefficientSolvent content
3.3569

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.95α = 90
b = 56.95β = 90
c = 135.8γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCHMIRRORS1996-11-20M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X31EMBL/DESY, HAMBURGX31

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7251000.0460.04627.34.727413-320
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7299.80.3080.3083.74.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE RPDB ENTRY 1BRS1.7252735227391000.1620.160.19RANDOM24.8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
23.83.523.821.8
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.5
p_staggered_tor17
p_planar_tor12.8
p_scangle_it7.4
p_scbond_it5.5
p_mcangle_it4.2
p_mcbond_it2.9
p_multtor_nbd0.264
p_chiral_restr0.257
p_singtor_nbd0.187
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.5
p_staggered_tor17
p_planar_tor12.8
p_scangle_it7.4
p_scbond_it5.5
p_mcangle_it4.2
p_mcbond_it2.9
p_multtor_nbd0.264
p_chiral_restr0.257
p_singtor_nbd0.187
p_xhyhbond_nbd0.143
p_xyhbond_nbd0.143
p_planar_d0.089
p_angle_d0.04
p_plane_restr0.035
p_bond_d0.025
p_angle_deg
p_hb_or_metal_coord
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1488
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement