☰ Navigation Tabs
FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) VARIANT CHAIN L GLU81->ASP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VFA PDB ENTRY 1VFA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.33 47.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.245 α = 90 b = 90.245 β = 90 c = 56.235 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 269 IMAGE PLATE MARRESEARCH 1992-12-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 13.89 94.7 0.08 4.3 96880 15.94
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 43.3 0.297 2.6
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1VFA 2.01 6 14719 14719 0.17 0.163 18.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 19.1 p_special_tor 15 p_transverse_tor 13.8 p_scangle_it 3.584 p_planar_tor 2.61 p_scbond_it 2.52 p_mcangle_it 1.96 p_mcbond_it 1.305 p_multtor_nbd 0.176 p_singtor_nbd 0.164
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 19.1 p_special_tor 15 p_transverse_tor 13.8 p_scangle_it 3.584 p_planar_tor 2.61 p_scbond_it 2.52 p_mcangle_it 1.96 p_mcbond_it 1.305 p_multtor_nbd 0.176 p_singtor_nbd 0.164 p_chiral_restr 0.145 p_xyhbond_nbd 0.138 p_planar_d 0.051 p_angle_d 0.05 p_bond_d 0.019 p_plane_restr 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1721 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction AGROVATA/ROTAVATA data reduction ALMN/CCP4 model building CCP4 refinement Agrovata data scaling ROTAVATA data scaling CCP4 phasing