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THROMBIN COMPLEXED WITH HIRUGEN AND A BETA-STRAND MIMETIC INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HAH PDB ENTRY 1HAH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion - hanging drop and macroseeding 7.3 0.1 M SODIUM PHOSPHATE BUFFER, PH 7.3, 27-28 % PEG 8000, HANGING DROPS AND MACROSEEDING; THEN SOAKED IN PEG-PHOSPHATE-0.1 M NACL, AND THE MOL 106 INHIBITOR WAS ADDED IN 3 STEPS WITH FINAL CONC. 7.3 MM, vapor diffusion - hanging drop and macroseeding
Crystal Properties Matthews coefficient Solvent content 2.4 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.3 α = 90 b = 73.09 β = 101.12 c = 73.82 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 AREA DETECTOR SIEMENS COLLIMATOR 1995-05-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 86 0.044 23.8 3 18219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.26 60 0.229 3.5 1.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION PREVIOUS STRUCTURE PDB ENTRY 1HAH 2.12 7 4 15585 75 0.155 0.1512 24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 21 p_planar_tor 4 p_scangle_it 3.5 p_scbond_it 2.4 p_mcangle_it 1.7 p_mcbond_it 1 p_multtor_nbd 0.26 p_xyhbond_nbd 0.25 p_singtor_nbd 0.22
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 21 p_planar_tor 4 p_scangle_it 3.5 p_scbond_it 2.4 p_mcangle_it 1.7 p_mcbond_it 1 p_multtor_nbd 0.26 p_xyhbond_nbd 0.25 p_singtor_nbd 0.22 p_chiral_restr 0.19 p_planar_d 0.049 p_angle_d 0.042 p_plane_restr 0.028 p_bond_d 0.02 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2298 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 40
Software Software Software Name Purpose XENGEN data collection XENGEN data reduction PROFFT refinement XENGEN data scaling