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COPPER AMINE OXIDASE FROM HANSENULA POLYMORPHA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAC PDB ENTRY 1OAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 PROTEIN WAS CRYSTALLIZED IN SITTING DROPS FROM 7-9% PEG 8000 AND 0.3 M POTASSIUM PHOSPHATE BUFFER, PH 6.2
Crystal Properties Matthews coefficient Solvent content 2.6 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.77 α = 90 b = 148.22 β = 90 c = 234.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU MIRRORS 1995-12-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 100 87.2 0.053 0.053 12.5 2.8 172832 27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.55 66.8 0.247 0.247 2.4 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT AND SIR THROUGHOUT PDB ENTRY 1OAC 2.4 100 1 157428 7906 83.6 0.184 0.184 0.224 RANDOM 24.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.9 x_scangle_it 5.38 x_scbond_it 3.9 x_mcangle_it 3.45 x_mcbond_it 2.38 x_angle_deg 1.7 x_improper_angle_d 0.81 x_bond_d 0.011 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.9 x_scangle_it 5.38 x_scbond_it 3.9 x_mcangle_it 3.45 x_mcbond_it 2.38 x_angle_deg 1.7 x_improper_angle_d 0.81 x_bond_d 0.011 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31164 Nucleic Acid Atoms Solvent Atoms 2556 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEIT data reduction X-PLOR model building X-PLOR refinement SCALEIT data scaling X-PLOR phasing