181D

SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.9pH 6.90, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
1.727.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 17.76α = 90
b = 30.96β = 90
c = 44.75γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray296DIFFRACTOMETERENRAF-NONIUS CAD4
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63912

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION1.6822625750.199
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it11.83
n_phos_bond_it11.02
n_sugar_angle_it9.4
n_sugar_bond_it8.19
n_multtor_nbd0.185
n_phos_bond_d0.127
n_singtor_nbd0.118
n_phos_bond_angle_d0.076
n_sugar_bond_angle_d0.041
n_chiral_restr0.034
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it11.83
n_phos_bond_it11.02
n_sugar_angle_it9.4
n_sugar_bond_it8.19
n_multtor_nbd0.185
n_phos_bond_d0.127
n_singtor_nbd0.118
n_phos_bond_angle_d0.076
n_sugar_bond_angle_d0.041
n_chiral_restr0.034
n_sugar_bond_d0.014
n_plane_restr0.006
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms240
Solvent Atoms42
Heterogen Atoms

Software

Software
Software NamePurpose
NUCLSQrefinement