14ZR | pdb_000014zr

Crystal Structure of FtsZ with Z954606858


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-909VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.7154.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.171α = 90
b = 89.171β = 90
c = 182.896γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-909ftsz-909x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-909SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-9092.29844.5851000.3140.3270.090.9916.813.136561
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-9092.2982.3371001.5641.6340.470.38311.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.29844.62536559192399.9590.2050.20210.2080.25710.258131.139
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0080.0040.008-0.027
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.294
r_dihedral_angle_6_deg14.152
r_lrange_it9.074
r_lrange_other8.958
r_dihedral_angle_1_deg7.252
r_dihedral_angle_2_deg5.878
r_scangle_it5.51
r_scangle_other5.509
r_mcangle_it4.661
r_mcangle_other4.661
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.294
r_dihedral_angle_6_deg14.152
r_lrange_it9.074
r_lrange_other8.958
r_dihedral_angle_1_deg7.252
r_dihedral_angle_2_deg5.878
r_scangle_it5.51
r_scangle_other5.509
r_mcangle_it4.661
r_mcangle_other4.661
r_scbond_it3.402
r_scbond_other3.401
r_mcbond_it2.825
r_mcbond_other2.821
r_angle_refined_deg1.616
r_angle_other_deg0.574
r_symmetry_nbd_other0.435
r_nbd_refined0.227
r_xyhbond_nbd_refined0.223
r_symmetry_xyhbond_nbd_refined0.214
r_nbd_other0.211
r_nbtor_refined0.17
r_symmetry_nbd_refined0.133
r_symmetry_nbtor_other0.112
r_chiral_restr0.075
r_symmetry_xyhbond_nbd_other0.066
r_xyhbond_nbd_other0.058
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction