14WL | pdb_000014wl

Crystal Structure of FtsZ with Z52425517

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-425	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.6	52.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.511	α = 90
b = 88.511	β = 90
c = 178.412	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-425	ftsz-425	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-425	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-425	1.897	44.256	100	0.192	0.199	0.054	0.998	10.7	13.4		62378

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-425	1.897	1.93		100	2.665	2.769	0.746	0.371		13.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.897	44.295	62369	3151	99.936	0.184	0.1818	0.1893	0.2156	0.2191	32.009

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.001			-0.001		0.002

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.82
r_dihedral_angle_6_deg	14.438
r_dihedral_angle_2_deg	9.879
r_lrange_it	8.424
r_lrange_other	8.358
r_scangle_it	6.924
r_scangle_other	6.923
r_dihedral_angle_1_deg	6.759
r_scbond_it	4.462
r_scbond_other	4.461
r_mcangle_other	4.022
r_mcangle_it	4.021
r_mcbond_it	2.796
r_mcbond_other	2.791
r_angle_refined_deg	1.707
r_angle_other_deg	0.68
r_symmetry_nbd_other	0.62
r_symmetry_xyhbond_nbd_refined	0.317
r_nbd_refined	0.225
r_symmetry_nbd_refined	0.211
r_nbd_other	0.211
r_xyhbond_nbd_refined	0.205
r_nbtor_refined	0.169
r_symmetry_xyhbond_nbd_other	0.145
r_symmetry_nbtor_other	0.134
r_chiral_restr	0.079
r_bond_refined_d	0.009
r_bond_other_d	0.007
r_gen_planes_refined	0.007
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	310
Heterogen Atoms	39

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction