14WI | pdb_000014wi

Crystal Structure of FtsZ with F6482-3468


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-42VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.676α = 90
b = 88.676β = 90
c = 179.701γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-42ftsz-42x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-42SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-422.12444.3381000.2380.2480.0680.9968.813.445021
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-422.1242.161002.1252.2140.6170.3413

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.12444.37744852228299.6140.1840.18250.1890.21910.224137.623
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0030.0020.003-0.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.256
r_dihedral_angle_6_deg14.149
r_dihedral_angle_2_deg13.345
r_lrange_it8.988
r_lrange_other8.958
r_scangle_it7.277
r_scangle_other7.276
r_dihedral_angle_1_deg6.596
r_mcangle_it4.792
r_mcangle_other4.792
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.256
r_dihedral_angle_6_deg14.149
r_dihedral_angle_2_deg13.345
r_lrange_it8.988
r_lrange_other8.958
r_scangle_it7.277
r_scangle_other7.276
r_dihedral_angle_1_deg6.596
r_mcangle_it4.792
r_mcangle_other4.792
r_scbond_it4.711
r_scbond_other4.71
r_mcbond_it3.175
r_mcbond_other3.17
r_angle_refined_deg1.669
r_angle_other_deg0.593
r_symmetry_nbd_other0.465
r_nbd_other0.226
r_nbd_refined0.216
r_symmetry_xyhbond_nbd_refined0.213
r_symmetry_nbd_refined0.2
r_xyhbond_nbd_refined0.187
r_nbtor_refined0.169
r_symmetry_nbtor_other0.107
r_symmetry_xyhbond_nbd_other0.1
r_chiral_restr0.073
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction