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Crystal Structure of FtsZ with F6482-3468
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-42 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.63 53.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.676 α = 90 b = 88.676 β = 90 c = 179.701 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-42 ftsz-42 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-42 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.920194 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-42 2.124 44.338 100 0.238 0.248 0.068 0.996 8.8 13.4 45021
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-42 2.124 2.16 100 2.125 2.214 0.617 0.34 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.124 44.377 44852 2282 99.614 0.184 0.1825 0.189 0.2191 0.2241 37.623
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.003 0.002 0.003 -0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.256 r_dihedral_angle_6_deg 14.149 r_dihedral_angle_2_deg 13.345 r_lrange_it 8.988 r_lrange_other 8.958 r_scangle_it 7.277 r_scangle_other 7.276 r_dihedral_angle_1_deg 6.596 r_mcangle_it 4.792 r_mcangle_other 4.792
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.256 r_dihedral_angle_6_deg 14.149 r_dihedral_angle_2_deg 13.345 r_lrange_it 8.988 r_lrange_other 8.958 r_scangle_it 7.277 r_scangle_other 7.276 r_dihedral_angle_1_deg 6.596 r_mcangle_it 4.792 r_mcangle_other 4.792 r_scbond_it 4.711 r_scbond_other 4.71 r_mcbond_it 3.175 r_mcbond_other 3.17 r_angle_refined_deg 1.669 r_angle_other_deg 0.593 r_symmetry_nbd_other 0.465 r_nbd_other 0.226 r_nbd_refined 0.216 r_symmetry_xyhbond_nbd_refined 0.213 r_symmetry_nbd_refined 0.2 r_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.169 r_symmetry_nbtor_other 0.107 r_symmetry_xyhbond_nbd_other 0.1 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction