14VX | pdb_000014vx

Crystal Structure of FtsZ with Z1551999220


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-389VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6453.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.718α = 90
b = 88.718β = 90
c = 180.567γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-389ftsz-389x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-389SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-3892.35739.81399.30.3780.3930.1070.9945.413.432891
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-3892.3572.3981002.9843.1140.8870.31112.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.35739.84532863170099.1160.1770.1750.17970.21820.218849.101
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.015-0.030.096
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.251
r_dihedral_angle_6_deg13.789
r_lrange_other11.229
r_lrange_it11.227
r_scangle_it9.143
r_scangle_other9.142
r_dihedral_angle_2_deg7.58
r_dihedral_angle_1_deg6.595
r_mcangle_other6.365
r_mcangle_it6.362
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.251
r_dihedral_angle_6_deg13.789
r_lrange_other11.229
r_lrange_it11.227
r_scangle_it9.143
r_scangle_other9.142
r_dihedral_angle_2_deg7.58
r_dihedral_angle_1_deg6.595
r_mcangle_other6.365
r_mcangle_it6.362
r_scbond_it5.978
r_scbond_other5.977
r_mcbond_it4.265
r_mcbond_other4.265
r_angle_refined_deg1.585
r_angle_other_deg0.55
r_symmetry_nbd_other0.398
r_nbd_refined0.221
r_xyhbond_nbd_refined0.202
r_nbtor_refined0.173
r_symmetry_xyhbond_nbd_refined0.173
r_nbd_other0.165
r_symmetry_nbd_refined0.162
r_symmetry_nbtor_other0.11
r_symmetry_xyhbond_nbd_other0.107
r_chiral_restr0.072
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction