14VL | pdb_000014vl

Crystal Structure of FtsZ with F6608-1013


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-301VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.5651.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.092α = 90
b = 88.092β = 90
c = 177.336γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-301ftsz-301x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-301SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-3011.93444.0461000.1870.1940.0530.99810.713.357987
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-3011.9341.9671002.5532.6540.7240.36813.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.93444.08557984291299.9620.1790.17680.18440.21330.216635.31
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0020.0010.002-0.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.06
r_dihedral_angle_3_deg13.79
r_dihedral_angle_2_deg10.393
r_lrange_it9.038
r_lrange_other8.926
r_scangle_it7.549
r_scangle_other7.548
r_dihedral_angle_1_deg6.221
r_scbond_it4.714
r_scbond_other4.714
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.06
r_dihedral_angle_3_deg13.79
r_dihedral_angle_2_deg10.393
r_lrange_it9.038
r_lrange_other8.926
r_scangle_it7.549
r_scangle_other7.548
r_dihedral_angle_1_deg6.221
r_scbond_it4.714
r_scbond_other4.714
r_mcangle_other4.372
r_mcangle_it4.371
r_mcbond_other2.879
r_mcbond_it2.86
r_angle_refined_deg1.552
r_angle_other_deg0.51
r_nbd_refined0.21
r_symmetry_xyhbond_nbd_refined0.191
r_symmetry_nbd_other0.188
r_xyhbond_nbd_refined0.179
r_nbd_other0.174
r_symmetry_nbd_refined0.172
r_nbtor_refined0.166
r_symmetry_nbtor_other0.082
r_symmetry_xyhbond_nbd_other0.082
r_chiral_restr0.072
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction