14ZJ | pdb_000014zj

Crystal Structure of FtsZ with Z396117078


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-765VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.585α = 90
b = 88.585β = 90
c = 178.668γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-765ftsz-765x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-765SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-7651.86544.2921000.2170.2260.0620.9981013.365805
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-7651.8651.8981002.7932.9030.790.37313.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.86544.33265801335299.9710.1840.18250.19030.21460.219629.81
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.001-0.001-0.0010.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg21.96
r_dihedral_angle_3_deg14.65
r_dihedral_angle_6_deg14.005
r_lrange_it8.262
r_lrange_other8.234
r_scangle_it7.018
r_scangle_other7.017
r_dihedral_angle_1_deg6.396
r_scbond_it4.546
r_scbond_other4.545
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg21.96
r_dihedral_angle_3_deg14.65
r_dihedral_angle_6_deg14.005
r_lrange_it8.262
r_lrange_other8.234
r_scangle_it7.018
r_scangle_other7.017
r_dihedral_angle_1_deg6.396
r_scbond_it4.546
r_scbond_other4.545
r_mcangle_other3.935
r_mcangle_it3.934
r_mcbond_it2.702
r_mcbond_other2.696
r_angle_refined_deg1.745
r_angle_other_deg0.646
r_symmetry_nbd_other0.53
r_xyhbond_nbd_other0.319
r_symmetry_nbd_refined0.311
r_nbd_other0.259
r_nbd_refined0.219
r_symmetry_xyhbond_nbd_refined0.178
r_xyhbond_nbd_refined0.173
r_nbtor_refined0.169
r_symmetry_nbtor_other0.125
r_chiral_restr0.08
r_symmetry_xyhbond_nbd_other0.048
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms43

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction