14ZF | pdb_000014zf

Crystal Structure of FtsZ with Z57260539


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-751VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.621α = 90
b = 88.621β = 90
c = 178.206γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-751ftsz-751x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-751SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-7512.24643.0011000.3030.3150.0870.9945.813.337713
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-7512.2462.2841002.3082.4040.6660.34912.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.24643.03837706197799.9280.1890.18670.19230.23060.235237.917
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0220.0110.022-0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.492
r_dihedral_angle_3_deg14.442
r_dihedral_angle_2_deg11.774
r_lrange_it8.212
r_lrange_other8.113
r_dihedral_angle_1_deg6.753
r_scangle_it6.341
r_scangle_other6.34
r_mcangle_it4.352
r_mcangle_other4.352
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.492
r_dihedral_angle_3_deg14.442
r_dihedral_angle_2_deg11.774
r_lrange_it8.212
r_lrange_other8.113
r_dihedral_angle_1_deg6.753
r_scangle_it6.341
r_scangle_other6.34
r_mcangle_it4.352
r_mcangle_other4.352
r_scbond_other4.023
r_scbond_it4.021
r_mcbond_it2.851
r_mcbond_other2.85
r_angle_refined_deg1.543
r_angle_other_deg0.583
r_symmetry_nbd_other0.458
r_symmetry_xyhbond_nbd_refined0.232
r_nbd_refined0.221
r_xyhbond_nbd_refined0.207
r_symmetry_nbd_refined0.194
r_nbd_other0.177
r_symmetry_xyhbond_nbd_other0.171
r_nbtor_refined0.17
r_symmetry_nbtor_other0.109
r_chiral_restr0.072
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction