14ZE | pdb_000014ze

Crystal Structure of FtsZ with F6616-6210


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-75VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.649α = 90
b = 88.649β = 90
c = 179.549γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-75ftsz-75x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-75SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-751.73544.3251000.1320.1370.0370.99912.913.482221
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-751.7351.7651002.7412.8470.7670.33113.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.73544.36482205416899.9420.1830.18140.18980.20640.215730.359
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0010.0010.001-0.004
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.73
r_dihedral_angle_3_deg14.498
r_dihedral_angle_2_deg11.729
r_lrange_it8.535
r_lrange_other8.508
r_scangle_it7.62
r_scangle_other7.618
r_dihedral_angle_1_deg6.41
r_scbond_it5.061
r_scbond_other5.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.73
r_dihedral_angle_3_deg14.498
r_dihedral_angle_2_deg11.729
r_lrange_it8.535
r_lrange_other8.508
r_scangle_it7.62
r_scangle_other7.618
r_dihedral_angle_1_deg6.41
r_scbond_it5.061
r_scbond_other5.06
r_mcangle_it4.103
r_mcangle_other4.103
r_mcbond_it2.951
r_mcbond_other2.948
r_angle_refined_deg1.796
r_angle_other_deg0.628
r_symmetry_nbd_other0.482
r_nbd_refined0.223
r_nbd_other0.203
r_nbtor_refined0.169
r_xyhbond_nbd_refined0.168
r_symmetry_xyhbond_nbd_refined0.152
r_symmetry_nbtor_other0.124
r_symmetry_nbd_refined0.115
r_chiral_restr0.088
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction