14ZA | pdb_000014za

Crystal Structure of FtsZ with Z734736324


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-735VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.5651.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.025α = 90
b = 88.025β = 90
c = 177.424γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-735ftsz-735x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-735SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-7352.82644.01398.90.4570.4750.1310.985.91318420
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-7352.8262.8751002.5322.630.7080.40213.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.82644.0511841391098.8140.1630.1590.1660.23710.236848.111
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.013-0.007-0.0130.043
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.028
r_dihedral_angle_6_deg13.77
r_lrange_it11.902
r_lrange_other11.72
r_dihedral_angle_2_deg8.919
r_scangle_it8.736
r_scangle_other8.734
r_dihedral_angle_1_deg6.906
r_mcangle_other6.468
r_mcangle_it6.467
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.028
r_dihedral_angle_6_deg13.77
r_lrange_it11.902
r_lrange_other11.72
r_dihedral_angle_2_deg8.919
r_scangle_it8.736
r_scangle_other8.734
r_dihedral_angle_1_deg6.906
r_mcangle_other6.468
r_mcangle_it6.467
r_scbond_it5.495
r_scbond_other5.494
r_mcbond_it4.076
r_mcbond_other4.076
r_angle_refined_deg1.622
r_angle_other_deg0.582
r_symmetry_nbd_other0.489
r_symmetry_xyhbond_nbd_refined0.345
r_symmetry_nbd_refined0.275
r_xyhbond_nbd_refined0.225
r_nbd_refined0.223
r_nbd_other0.209
r_nbtor_refined0.171
r_symmetry_nbtor_other0.107
r_symmetry_xyhbond_nbd_other0.085
r_chiral_restr0.071
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_xyhbond_nbd_other0.005
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction