14YZ | pdb_000014yz

Crystal Structure of FtsZ with Z1639162606

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-727	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.55	51.79

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.001	α = 90
b = 88.001	β = 90
c = 177.08	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-727	ftsz-727	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-727	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.920051	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-727	2.546	44	100	0.336	0.35	0.095	0.993	8.3	13.5		25392

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-727	2.546	2.59		100	2.277	2.364	0.634	0.361		13.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.546	44.039	25383	1272	99.933	0.17	0.1665	0.1728	0.2332	0.2329	45.835

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.036	0.018		0.036		-0.116

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.932
r_dihedral_angle_6_deg	14.529
r_lrange_it	11.902
r_lrange_other	11.807
r_scangle_it	9.461
r_scangle_other	9.459
r_dihedral_angle_2_deg	8.591
r_dihedral_angle_1_deg	6.6
r_mcangle_other	6.384
r_mcangle_it	6.382
r_scbond_it	6.037
r_scbond_other	6.037
r_mcbond_it	4.081
r_mcbond_other	4.081
r_angle_refined_deg	1.646
r_angle_other_deg	0.581
r_symmetry_nbd_other	0.492
r_symmetry_xyhbond_nbd_refined	0.359
r_xyhbond_nbd_refined	0.232
r_nbd_refined	0.225
r_symmetry_xyhbond_nbd_other	0.209
r_nbd_other	0.196
r_symmetry_nbd_refined	0.179
r_nbtor_refined	0.171
r_symmetry_nbtor_other	0.118
r_chiral_restr	0.074
r_chiral_restr_other	0.014
r_bond_refined_d	0.008
r_bond_other_d	0.005
r_gen_planes_refined	0.005
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	309
Heterogen Atoms	18

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction