14YW | pdb_000014yw

Crystal Structure of FtsZ with Z57329001

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-704	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.57	52.07

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.193	α = 90
b = 88.193	β = 90
c = 177.337	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-704	ftsz-704	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-704	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-704	2.024	44.097	100	0.218	0.227	0.062	0.997	10.1	13.3		50752

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-704	2.024	2.059		100	2.263	2.356	0.65	0.344		13

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.024	44.135	50737	2559	99.943	0.181	0.1792	0.1873	0.2182	0.222	34.78

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.005	-0.002		-0.005		0.016

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.433
r_dihedral_angle_6_deg	14.033
r_lrange_it	9.045
r_lrange_other	8.985
r_dihedral_angle_2_deg	8.505
r_scangle_it	7.53
r_scangle_other	7.528
r_dihedral_angle_1_deg	6.602
r_scbond_it	4.85
r_scbond_other	4.849
r_mcangle_it	4.575
r_mcangle_other	4.575
r_mcbond_it	3.088
r_mcbond_other	3.085
r_angle_refined_deg	1.678
r_angle_other_deg	0.578
r_symmetry_nbd_other	0.467
r_symmetry_xyhbond_nbd_refined	0.285
r_nbd_refined	0.222
r_xyhbond_nbd_refined	0.218
r_nbtor_refined	0.17
r_symmetry_nbd_refined	0.162
r_nbd_other	0.161
r_symmetry_nbtor_other	0.13
r_chiral_restr	0.076
r_symmetry_xyhbond_nbd_other	0.035
r_chiral_restr_other	0.017
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	312
Heterogen Atoms	21

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction