14YR | pdb_000014yr

Crystal Structure of FtsZ with Z2213892813


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-687VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.572α = 90
b = 88.572β = 90
c = 178.777γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-687ftsz-687x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-687SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-6872.00844.2861000.1870.1950.0540.99811.213.352808
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-6872.0082.0431002.4252.5240.6970.35913.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.00844.32552805266899.970.180.17850.18660.21210.218336.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0170.0090.017-0.056
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.52
r_dihedral_angle_6_deg14.199
r_lrange_it9.004
r_lrange_other8.989
r_dihedral_angle_2_deg8.332
r_scangle_it7.764
r_scangle_other7.762
r_dihedral_angle_1_deg6.466
r_scbond_it5.085
r_scbond_other5.084
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.52
r_dihedral_angle_6_deg14.199
r_lrange_it9.004
r_lrange_other8.989
r_dihedral_angle_2_deg8.332
r_scangle_it7.764
r_scangle_other7.762
r_dihedral_angle_1_deg6.466
r_scbond_it5.085
r_scbond_other5.084
r_mcangle_it4.678
r_mcangle_other4.678
r_mcbond_it3.229
r_mcbond_other3.228
r_angle_refined_deg1.675
r_angle_other_deg0.576
r_dihedral_angle_other_2_deg0.379
r_symmetry_nbd_other0.337
r_symmetry_xyhbond_nbd_refined0.286
r_nbd_refined0.22
r_symmetry_nbd_refined0.189
r_xyhbond_nbd_refined0.179
r_nbd_other0.173
r_nbtor_refined0.168
r_symmetry_nbtor_other0.127
r_symmetry_xyhbond_nbd_other0.125
r_chiral_restr0.077
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms312
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction