14YP | pdb_000014yp

Crystal Structure of FtsZ with Z1267800292

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-674	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.57	52.17

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.264	α = 90
b = 88.264	β = 90
c = 177.409	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-674	ftsz-674	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-674	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.92	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-674	2.102	44.132	100	0.278	0.289	0.078	0.995	8.3	13.4		45345

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-674	2.102	2.139		100	2.471	2.576	0.724	0.345		12.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.102	44.171	45335	2305	99.963	0.177	0.1751	0.1825	0.2193	0.2213	36.581

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.001	0.001		0.001		-0.004

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.992
r_dihedral_angle_6_deg	14.44
r_lrange_it	9.05
r_lrange_other	8.994
r_dihedral_angle_2_deg	8.197
r_scangle_it	7.512
r_scangle_other	7.511
r_dihedral_angle_1_deg	6.626
r_scbond_it	4.802
r_scbond_other	4.801
r_mcangle_other	4.48
r_mcangle_it	4.479
r_mcbond_it	2.991
r_mcbond_other	2.986
r_angle_refined_deg	1.617
r_angle_other_deg	0.608
r_symmetry_nbd_other	0.477
r_symmetry_xyhbond_nbd_other	0.223
r_symmetry_xyhbond_nbd_refined	0.217
r_nbd_refined	0.215
r_xyhbond_nbd_refined	0.195
r_nbd_other	0.182
r_nbtor_refined	0.168
r_symmetry_nbd_refined	0.165
r_symmetry_nbtor_other	0.115
r_chiral_restr	0.076
r_bond_refined_d	0.007
r_gen_planes_refined	0.006
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	310
Heterogen Atoms	18

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction