14YO | pdb_000014yo

Crystal Structure of FtsZ with Z69092635


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-657VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.436α = 90
b = 88.436β = 90
c = 178.951γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-657ftsz-657x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-657SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-6571.91744.2181000.2210.2290.0630.9979.513.360539
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-6571.9171.951002.7532.8620.7780.35413.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.91744.25760529306199.9570.1830.18140.1890.21410.219332.396
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.005-0.002-0.0050.015
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.795
r_dihedral_angle_6_deg14.648
r_dihedral_angle_2_deg11.354
r_lrange_it8.575
r_lrange_other8.535
r_scangle_it7.277
r_scangle_other7.275
r_dihedral_angle_1_deg6.668
r_scbond_it4.702
r_scbond_other4.701
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.795
r_dihedral_angle_6_deg14.648
r_dihedral_angle_2_deg11.354
r_lrange_it8.575
r_lrange_other8.535
r_scangle_it7.277
r_scangle_other7.275
r_dihedral_angle_1_deg6.668
r_scbond_it4.702
r_scbond_other4.701
r_mcangle_it4.327
r_mcangle_other4.326
r_mcbond_it2.936
r_mcbond_other2.935
r_angle_refined_deg1.721
r_angle_other_deg0.606
r_symmetry_nbd_other0.432
r_symmetry_xyhbond_nbd_other0.298
r_nbd_refined0.221
r_symmetry_xyhbond_nbd_refined0.198
r_nbd_other0.181
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.168
r_symmetry_nbd_refined0.145
r_symmetry_nbtor_other0.113
r_chiral_restr0.079
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction