14YL | pdb_000014yl

Crystal Structure of FtsZ with Z18197050

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-651	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.68	54.09

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 89.091	α = 90
b = 89.091	β = 90
c = 181.432	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-651	ftsz-651	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-651	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.92	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-651	2.09	44.546	100	0.149	0.155	0.042	0.999	13	13.4		48108

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-651	2.09	2.126		100	2.307	2.408	0.688	0.368		12.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.09	44.585	48086	2442	99.94	0.182	0.1801	0.1865	0.2148	0.223	42.482

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.005	0.002		0.005		-0.015

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.312
r_dihedral_angle_2_deg	14.661
r_dihedral_angle_6_deg	14.292
r_lrange_it	10.309
r_lrange_other	10.24
r_scangle_it	7.83
r_scangle_other	7.828
r_dihedral_angle_1_deg	7.135
r_mcangle_it	5.259
r_mcangle_other	5.258
r_scbond_it	5.184
r_scbond_other	5.183
r_mcbond_it	3.602
r_mcbond_other	3.597
r_angle_refined_deg	1.738
r_angle_other_deg	0.684
r_symmetry_nbd_other	0.572
r_symmetry_xyhbond_nbd_other	0.353
r_xyhbond_nbd_refined	0.229
r_nbd_other	0.227
r_nbd_refined	0.225
r_symmetry_nbd_refined	0.205
r_symmetry_xyhbond_nbd_refined	0.199
r_nbtor_refined	0.17
r_symmetry_nbtor_other	0.128
r_chiral_restr	0.08
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.006
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	308
Heterogen Atoms	33

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction