14YE | pdb_000014ye

Crystal Structure of FtsZ with Z1217960891


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-633VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6252.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.629α = 90
b = 88.629β = 90
c = 179.022γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-633ftsz-633x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-633SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-6331.86744.3141000.2220.2310.0630.9979.113.465821
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-6331.8671.8991002.8332.9440.7990.35813.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.86744.35465809335199.9390.1820.18030.18850.21410.219928.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.014-0.007-0.0140.045
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.497
r_dihedral_angle_6_deg14.468
r_dihedral_angle_2_deg9.542
r_lrange_it7.976
r_lrange_other7.916
r_dihedral_angle_1_deg6.737
r_scangle_it6.494
r_scangle_other6.493
r_scbond_it4.204
r_scbond_other4.192
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.497
r_dihedral_angle_6_deg14.468
r_dihedral_angle_2_deg9.542
r_lrange_it7.976
r_lrange_other7.916
r_dihedral_angle_1_deg6.737
r_scangle_it6.494
r_scangle_other6.493
r_scbond_it4.204
r_scbond_other4.192
r_mcangle_it3.707
r_mcangle_other3.706
r_mcbond_it2.515
r_mcbond_other2.509
r_angle_refined_deg1.795
r_angle_other_deg0.712
r_symmetry_nbd_other0.655
r_symmetry_xyhbond_nbd_refined0.227
r_nbd_refined0.221
r_xyhbond_nbd_refined0.184
r_symmetry_nbtor_other0.178
r_nbd_other0.174
r_nbtor_refined0.167
r_symmetry_nbd_refined0.16
r_symmetry_xyhbond_nbd_other0.109
r_chiral_restr0.083
r_bond_refined_d0.009
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms323
Heterogen Atoms50

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction