14YC | pdb_000014yc

Crystal Structure of FtsZ with Z212122838

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-611	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.65	53.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.973	α = 90
b = 88.973	β = 90
c = 179.598	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-611	ftsz-611	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-611	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-611	1.982	44.486	100	0.177	0.184	0.05	0.998	10.7	13.3		55623

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-611	1.982	2.017		100	2.165	2.251	0.614	0.326		13.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.982	44.526	55621	2788	99.971	0.184	0.1828	0.1897	0.216	0.2225	37.679

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.01	-0.005		-0.01		0.033

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.276
r_dihedral_angle_6_deg	14.518
r_lrange_it	9.323
r_lrange_other	9.27
r_dihedral_angle_2_deg	7.943
r_scangle_it	7.553
r_scangle_other	7.552
r_dihedral_angle_1_deg	6.635
r_scbond_it	5.018
r_scbond_other	5.017
r_mcangle_it	4.855
r_mcangle_other	4.855
r_mcbond_it	3.315
r_mcbond_other	3.311
r_angle_refined_deg	1.709
r_angle_other_deg	0.583
r_symmetry_nbd_other	0.412
r_nbd_refined	0.223
r_symmetry_xyhbond_nbd_refined	0.203
r_xyhbond_nbd_refined	0.193
r_nbd_other	0.192
r_symmetry_nbd_refined	0.191
r_nbtor_refined	0.17
r_symmetry_xyhbond_nbd_other	0.111
r_symmetry_nbtor_other	0.096
r_chiral_restr	0.077
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.003
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	308
Heterogen Atoms	19

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction