14XZ | pdb_000014xz

Crystal Structure of FtsZ with Z444299230


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-585VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.5451.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.773α = 90
b = 87.773β = 90
c = 177.022γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-585ftsz-585x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-585SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-5852.46943.8871000.3940.410.1110.9916.713.627661
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-5852.4692.5121002.9593.070.820.35814

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.46943.92527658140199.9490.1710.16760.17410.23730.235944.82
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.016-0.008-0.0160.051
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.269
r_dihedral_angle_6_deg13.046
r_dihedral_angle_2_deg12.482
r_lrange_it11.047
r_lrange_other10.908
r_scangle_it8.586
r_scangle_other8.585
r_dihedral_angle_1_deg6.964
r_mcangle_other5.713
r_mcangle_it5.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.269
r_dihedral_angle_6_deg13.046
r_dihedral_angle_2_deg12.482
r_lrange_it11.047
r_lrange_other10.908
r_scangle_it8.586
r_scangle_other8.585
r_dihedral_angle_1_deg6.964
r_mcangle_other5.713
r_mcangle_it5.71
r_scbond_it5.38
r_scbond_other5.378
r_mcbond_it3.599
r_mcbond_other3.595
r_angle_refined_deg1.541
r_angle_other_deg0.547
r_symmetry_nbd_other0.487
r_symmetry_xyhbond_nbd_refined0.273
r_xyhbond_nbd_refined0.223
r_nbd_refined0.218
r_nbd_other0.201
r_nbtor_refined0.169
r_symmetry_nbd_refined0.168
r_xyhbond_nbd_other0.16
r_symmetry_xyhbond_nbd_other0.108
r_symmetry_nbtor_other0.107
r_chiral_restr0.071
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction