14XS | pdb_000014xs

Crystal Structure of FtsZ with Z364577298


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-542VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.5952.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.416α = 90
b = 88.416β = 90
c = 178.361γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-542ftsz-542x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-542SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-5421.9344.2081000.2160.2240.0610.9989.613.459076
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-5421.931.9641002.7882.8990.790.35213.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9344.24759069298299.9560.1820.18030.1880.21420.219733.389
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.002-0.001-0.0020.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.614
r_dihedral_angle_3_deg14.518
r_dihedral_angle_2_deg10.181
r_lrange_it8.905
r_lrange_other8.872
r_scangle_it7.704
r_scangle_other7.703
r_dihedral_angle_1_deg6.536
r_scbond_it4.991
r_scbond_other4.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.614
r_dihedral_angle_3_deg14.518
r_dihedral_angle_2_deg10.181
r_lrange_it8.905
r_lrange_other8.872
r_scangle_it7.704
r_scangle_other7.703
r_dihedral_angle_1_deg6.536
r_scbond_it4.991
r_scbond_other4.99
r_mcangle_it4.262
r_mcangle_other4.262
r_mcbond_it2.923
r_mcbond_other2.919
r_angle_refined_deg1.69
r_angle_other_deg0.587
r_symmetry_nbd_other0.4
r_nbd_refined0.217
r_symmetry_nbd_refined0.193
r_symmetry_xyhbond_nbd_refined0.193
r_nbd_other0.188
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.167
r_symmetry_nbtor_other0.104
r_chiral_restr0.077
r_symmetry_xyhbond_nbd_other0.069
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction