14XP | pdb_000014xp

Crystal Structure of FtsZ with F2189-0570


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-53VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6453.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.851α = 90
b = 88.851β = 90
c = 179.927γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-53ftsz-53x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-53SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-531.99543.131000.1720.1790.0490.9991213.354565
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-531.9952.0291002.2442.3340.6410.35413.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.99543.16754557274999.9540.1820.18040.18840.21150.218837.244
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0170.0090.017-0.056
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.602
r_dihedral_angle_6_deg14.458
r_lrange_it9.081
r_lrange_other9.05
r_scangle_it7.679
r_scangle_other7.678
r_dihedral_angle_2_deg7.547
r_dihedral_angle_1_deg6.583
r_scbond_it5.052
r_scbond_other5.051
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.602
r_dihedral_angle_6_deg14.458
r_lrange_it9.081
r_lrange_other9.05
r_scangle_it7.679
r_scangle_other7.678
r_dihedral_angle_2_deg7.547
r_dihedral_angle_1_deg6.583
r_scbond_it5.052
r_scbond_other5.051
r_mcangle_it4.71
r_mcangle_other4.71
r_mcbond_it3.313
r_mcbond_other3.311
r_angle_refined_deg1.709
r_angle_other_deg0.588
r_symmetry_nbd_other0.357
r_symmetry_xyhbond_nbd_refined0.294
r_nbd_refined0.218
r_symmetry_nbd_refined0.202
r_nbd_other0.183
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.169
r_symmetry_nbtor_other0.109
r_chiral_restr0.082
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction