14XK | pdb_000014xk

Crystal Structure of FtsZ with Z64450924


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-513VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.524α = 90
b = 88.524β = 90
c = 178.077γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-513ftsz-513x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-513SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-5131.8244.2621000.1640.170.0460.99911.613.470485
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-5131.821.8521002.752.8540.7610.34513.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8244.30170439358299.8950.1810.17950.18760.20880.21433.027
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0060.0030.006-0.018
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.579
r_dihedral_angle_6_deg13.884
r_dihedral_angle_2_deg12.986
r_lrange_other9.029
r_lrange_it9.023
r_scangle_it7.92
r_scangle_other7.919
r_dihedral_angle_1_deg6.342
r_scbond_it5.142
r_scbond_other5.127
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.579
r_dihedral_angle_6_deg13.884
r_dihedral_angle_2_deg12.986
r_lrange_other9.029
r_lrange_it9.023
r_scangle_it7.92
r_scangle_other7.919
r_dihedral_angle_1_deg6.342
r_scbond_it5.142
r_scbond_other5.127
r_mcangle_it4.314
r_mcangle_other4.314
r_mcbond_it3.096
r_mcbond_other3.088
r_angle_refined_deg1.771
r_angle_other_deg0.611
r_symmetry_nbd_other0.431
r_symmetry_xyhbond_nbd_refined0.298
r_nbd_refined0.221
r_xyhbond_nbd_refined0.179
r_nbd_other0.176
r_nbtor_refined0.167
r_symmetry_nbd_refined0.136
r_symmetry_nbtor_other0.106
r_symmetry_xyhbond_nbd_other0.103
r_chiral_restr0.085
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction