14XE | pdb_000014xe

Crystal Structure of FtsZ with F9995-0998


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-49VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6553.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.013α = 90
b = 89.013β = 90
c = 179.717γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-49ftsz-49x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-49SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-491.91443.2011000.1540.1610.0440.99912.413.361885
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-491.9141.9471002.1232.2070.60.61913.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.91443.23961751311699.7480.1870.18560.19330.21580.224133.883
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.007-0.003-0.0070.021
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.787
r_dihedral_angle_6_deg13.975
r_dihedral_angle_2_deg8.936
r_lrange_it8.934
r_lrange_other8.883
r_scangle_it7.639
r_scangle_other7.638
r_dihedral_angle_1_deg6.326
r_scbond_it4.963
r_scbond_other4.962
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.787
r_dihedral_angle_6_deg13.975
r_dihedral_angle_2_deg8.936
r_lrange_it8.934
r_lrange_other8.883
r_scangle_it7.639
r_scangle_other7.638
r_dihedral_angle_1_deg6.326
r_scbond_it4.963
r_scbond_other4.962
r_mcangle_other4.56
r_mcangle_it4.559
r_mcbond_it3.187
r_mcbond_other3.178
r_angle_refined_deg1.767
r_angle_other_deg0.618
r_symmetry_nbd_other0.456
r_symmetry_xyhbond_nbd_other0.326
r_symmetry_xyhbond_nbd_refined0.315
r_nbd_refined0.217
r_symmetry_nbd_refined0.204
r_nbd_other0.188
r_xyhbond_nbd_refined0.187
r_nbtor_refined0.168
r_symmetry_nbtor_other0.112
r_chiral_restr0.083
r_xyhbond_nbd_other0.046
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction