14WZ | pdb_000014wz

Crystal Structure of FtsZ with Z192955056

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-470	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.63	53.17

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.688	α = 90
b = 88.688	β = 90
c = 179.502	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-470	ftsz-470	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-470	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-470	1.921	44.344	100	0.186	0.193	0.053	0.998	10.9	13.3		60641

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-470	1.921	1.954		100	2.525	2.625	0.716	0.389		13.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.921	44.383	60635	3062	99.947	0.183	0.1808	0.1891	0.2151	0.221	33.186

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
					0.001

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.834
r_dihedral_angle_6_deg	14.121
r_dihedral_angle_2_deg	11.281
r_lrange_it	8.652
r_lrange_other	8.609
r_scangle_it	7.255
r_scangle_other	7.254
r_dihedral_angle_1_deg	6.66
r_scbond_it	4.769
r_scbond_other	4.769
r_mcangle_it	4.226
r_mcangle_other	4.226
r_mcbond_it	2.935
r_mcbond_other	2.928
r_angle_refined_deg	1.732
r_angle_other_deg	0.628
r_symmetry_nbd_other	0.503
r_symmetry_xyhbond_nbd_refined	0.286
r_symmetry_xyhbond_nbd_other	0.28
r_nbd_refined	0.219
r_nbd_other	0.195
r_xyhbond_nbd_refined	0.188
r_nbtor_refined	0.17
r_xyhbond_nbd_other	0.161
r_symmetry_nbtor_other	0.149
r_symmetry_nbd_refined	0.133
r_chiral_restr	0.079
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.005
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	310
Heterogen Atoms	22

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction