14WU | pdb_000014wu

Crystal Structure of FtsZ with Z48847594

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-463	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.63	53.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.714	α = 90
b = 88.714	β = 90
c = 179.482	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-463	ftsz-463	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-463	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-463	2.021	44.357	99.9	0.244	0.253	0.069	0.996	8.7	13.4		52087

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-463	2.021	2.055		100	3.074	3.197	0.877	0.349		13.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.021	44.396	52069	2631	99.82	0.182	0.1803	0.1875	0.2127	0.2191	34.197

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.001	-0.001		-0.001		0.005

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.841
r_dihedral_angle_6_deg	14.244
r_dihedral_angle_2_deg	12.944
r_lrange_it	9.668
r_lrange_other	9.515
r_scangle_it	7.04
r_scangle_other	7.039
r_dihedral_angle_1_deg	6.541
r_scbond_it	4.551
r_scbond_other	4.551
r_mcangle_it	4.314
r_mcangle_other	4.314
r_mcbond_it	2.949
r_mcbond_other	2.948
r_angle_refined_deg	1.704
r_dihedral_angle_other_2_deg	1.213
r_angle_other_deg	0.636
r_symmetry_nbd_other	0.549
r_symmetry_xyhbond_nbd_other	0.394
r_nbd_refined	0.215
r_nbd_other	0.208
r_symmetry_xyhbond_nbd_refined	0.205
r_xyhbond_nbd_refined	0.2
r_symmetry_nbd_refined	0.17
r_nbtor_refined	0.168
r_symmetry_nbtor_other	0.139
r_chiral_restr	0.077
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.005
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	315
Heterogen Atoms	37

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction