Crystal Structure of FtsZ with Z1295863442


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-461VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.51α = 90
b = 88.51β = 90
c = 179.318γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-461ftsz-461x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-461SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-4612.13144.2551000.3470.3610.0980.993713.544309
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-4612.1312.1671002.9033.0210.8340.36813.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.13144.29444301226999.9730.1830.18060.18790.21870.22232.697
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg15.431
r_dihedral_angle_3_deg15.253
r_lrange_it8.125
r_lrange_other8.066
r_dihedral_angle_2_deg7.709
r_dihedral_angle_1_deg6.671
r_scangle_it6.456
r_scangle_other6.456
r_scbond_it4.103
r_scbond_other4.102
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg15.431
r_dihedral_angle_3_deg15.253
r_lrange_it8.125
r_lrange_other8.066
r_dihedral_angle_2_deg7.709
r_dihedral_angle_1_deg6.671
r_scangle_it6.456
r_scangle_other6.456
r_scbond_it4.103
r_scbond_other4.102
r_mcangle_other3.984
r_mcangle_it3.983
r_mcbond_it2.557
r_mcbond_other2.556
r_angle_refined_deg1.68
r_angle_other_deg0.659
r_symmetry_nbd_other0.578
r_symmetry_xyhbond_nbd_other0.253
r_nbd_refined0.222
r_nbd_other0.218
r_xyhbond_nbd_refined0.191
r_symmetry_nbd_refined0.186
r_nbtor_refined0.17
r_symmetry_nbtor_other0.155
r_symmetry_xyhbond_nbd_refined0.151
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.006
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms314
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction