14WD | pdb_000014wd

Crystal Structure of FtsZ with F6617-2523


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-41VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.73α = 90
b = 88.73β = 90
c = 179.617γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-41ftsz-41x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-41SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-411.92644.3651000.180.1880.0510.99811.413.460302
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-411.9261.9591002.2742.3640.6440.3713.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.92644.40460296305099.960.1830.18150.18910.21470.22133.127
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0060.0030.006-0.018
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.863
r_dihedral_angle_6_deg14.379
r_dihedral_angle_2_deg13.643
r_lrange_it8.925
r_lrange_other8.828
r_scangle_it7.535
r_scangle_other7.533
r_dihedral_angle_1_deg6.635
r_scbond_it4.9
r_scbond_other4.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.863
r_dihedral_angle_6_deg14.379
r_dihedral_angle_2_deg13.643
r_lrange_it8.925
r_lrange_other8.828
r_scangle_it7.535
r_scangle_other7.533
r_dihedral_angle_1_deg6.635
r_scbond_it4.9
r_scbond_other4.9
r_mcangle_it4.345
r_mcangle_other4.345
r_mcbond_it2.992
r_mcbond_other2.983
r_angle_refined_deg1.74
r_angle_other_deg0.606
r_symmetry_nbd_other0.487
r_symmetry_xyhbond_nbd_refined0.258
r_nbd_refined0.222
r_nbd_other0.205
r_xyhbond_nbd_refined0.19
r_nbtor_refined0.17
r_symmetry_nbd_refined0.169
r_symmetry_nbtor_other0.116
r_chiral_restr0.079
r_symmetry_xyhbond_nbd_other0.054
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction