14WC | pdb_000014wc

Crystal Structure of FtsZ with Z33452106

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-408	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.62	53.03

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.595	α = 90
b = 88.595	β = 90
c = 179.328	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-408	ftsz-408	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-408	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-408	1.973	44.298	100	0.201	0.209	0.057	0.998	11	13.3		55831

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-408	1.973	2.007		100	2.653	2.76	0.759	0.332		13.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.973	44.337	55808	2798	99.937	0.183	0.1818	0.1888	0.2146	0.2215	33.749

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.004	-0.002		-0.004		0.013

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	19.619
r_dihedral_angle_3_deg	15.154
r_dihedral_angle_6_deg	13.893
r_lrange_it	8.607
r_lrange_other	8.581
r_scangle_it	7.03
r_scangle_other	7.029
r_dihedral_angle_1_deg	6.501
r_scbond_it	4.545
r_scbond_other	4.542
r_mcangle_it	4.22
r_mcangle_other	4.22
r_mcbond_it	2.838
r_mcbond_other	2.834
r_angle_refined_deg	1.744
r_angle_other_deg	0.687
r_symmetry_nbd_other	0.594
r_nbd_other	0.242
r_symmetry_xyhbond_nbd_refined	0.225
r_symmetry_nbd_refined	0.221
r_nbd_refined	0.218
r_xyhbond_nbd_refined	0.187
r_nbtor_refined	0.169
r_symmetry_nbtor_other	0.168
r_symmetry_xyhbond_nbd_other	0.105
r_chiral_restr	0.082
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.006
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	311
Heterogen Atoms	44

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction