14WA | pdb_000014wa

Crystal Structure of FtsZ with Z85956652

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-401	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.64	53.46

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.782	α = 90
b = 88.782	β = 90
c = 180.209	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-401	ftsz-401	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-401	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-401	1.942	43.103	100	0.23	0.241	0.071	0.997	6.8	11.5		59092

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-401	1.942	1.976		100	2.04	2.135	0.626	0.369		11.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.942	43.14	59063	2977	99.909	0.188	0.1867	0.1938	0.2191	0.2263	33.505

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.008	0.004		0.008		-0.025

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	16.908
r_dihedral_angle_6_deg	14.861
r_dihedral_angle_3_deg	14.771
r_lrange_it	8.205
r_lrange_other	8.13
r_dihedral_angle_1_deg	6.725
r_scangle_it	6.576
r_scangle_other	6.575
r_scbond_it	4.299
r_scbond_other	4.298
r_mcangle_it	4.187
r_mcangle_other	4.187
r_mcbond_it	2.833
r_mcbond_other	2.832
r_angle_refined_deg	1.727
r_angle_other_deg	0.671
r_symmetry_nbd_other	0.574
r_symmetry_nbd_refined	0.22
r_nbd_refined	0.218
r_nbd_other	0.212
r_xyhbond_nbd_refined	0.209
r_symmetry_xyhbond_nbd_refined	0.208
r_symmetry_xyhbond_nbd_other	0.173
r_nbtor_refined	0.169
r_symmetry_nbtor_other	0.154
r_chiral_restr	0.082
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.006
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	311
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction