14VS | pdb_000014vs

Crystal Structure of FtsZ with Z45497619


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-342VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.5351.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.758α = 90
b = 87.758β = 90
c = 176.725γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-342ftsz-342x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-342SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-3422.26243.8791000.2810.2920.0790.996813.535898
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-3422.2622.3011003.0733.1960.8720.33313.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.26243.91835887187699.9580.170.16710.17590.22410.227245.427
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0020.0010.002-0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.803
r_dihedral_angle_6_deg14.315
r_lrange_it11.626
r_lrange_other11.519
r_scangle_it9.923
r_scangle_other9.921
r_dihedral_angle_2_deg8.767
r_dihedral_angle_1_deg6.654
r_scbond_it6.453
r_scbond_other6.453
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.803
r_dihedral_angle_6_deg14.315
r_lrange_it11.626
r_lrange_other11.519
r_scangle_it9.923
r_scangle_other9.921
r_dihedral_angle_2_deg8.767
r_dihedral_angle_1_deg6.654
r_scbond_it6.453
r_scbond_other6.453
r_mcangle_other6.248
r_mcangle_it6.246
r_mcbond_it4.205
r_mcbond_other4.198
r_angle_refined_deg1.776
r_angle_other_deg0.564
r_symmetry_nbd_refined0.299
r_symmetry_xyhbond_nbd_refined0.274
r_xyhbond_nbd_refined0.232
r_nbd_refined0.221
r_symmetry_nbd_other0.199
r_nbd_other0.198
r_chiral_restr_other0.182
r_nbtor_refined0.172
r_symmetry_nbtor_other0.085
r_chiral_restr0.076
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms305
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction