14VK | pdb_000014vk

Crystal Structure of FtsZ with F6616-3495


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-296VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6453.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.868α = 90
b = 88.868β = 90
c = 179.62γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-296ftsz-296x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-296SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2962.10844.4341000.2810.2920.080.9957.113.446168
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2962.1082.1441002.6342.7470.7780.34612.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.10844.47446148235399.9130.1830.18070.18770.21740.223135.602
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.01-0.020.066
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.344
r_dihedral_angle_6_deg14.856
r_lrange_it8.544
r_lrange_other8.497
r_dihedral_angle_2_deg8.445
r_scangle_it7.128
r_scangle_other7.127
r_dihedral_angle_1_deg6.781
r_scbond_it4.557
r_scbond_other4.556
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.344
r_dihedral_angle_6_deg14.856
r_lrange_it8.544
r_lrange_other8.497
r_dihedral_angle_2_deg8.445
r_scangle_it7.128
r_scangle_other7.127
r_dihedral_angle_1_deg6.781
r_scbond_it4.557
r_scbond_other4.556
r_mcangle_it4.292
r_mcangle_other4.292
r_mcbond_it2.835
r_mcbond_other2.832
r_angle_refined_deg1.657
r_angle_other_deg0.643
r_symmetry_nbd_other0.546
r_symmetry_xyhbond_nbd_refined0.247
r_nbd_refined0.22
r_nbd_other0.203
r_xyhbond_nbd_refined0.202
r_symmetry_nbd_refined0.193
r_nbtor_refined0.169
r_symmetry_nbtor_other0.135
r_symmetry_xyhbond_nbd_other0.096
r_chiral_restr0.078
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction