14VI | pdb_000014vi

Crystal Structure of FtsZ with F2111-0067


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-292VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.478α = 90
b = 88.478β = 90
c = 178.636γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-292ftsz-292x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-292SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2922.01344.2391000.2060.2140.060.9979.712.552270
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2922.0132.0471002.1482.2540.6650.33310.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.01344.27852256264099.9540.1810.17950.18740.21320.217632.948
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0120.0060.012-0.039
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.811
r_dihedral_angle_6_deg14.62
r_dihedral_angle_2_deg12.22
r_lrange_it8.655
r_lrange_other8.641
r_scangle_it7.318
r_scangle_other7.317
r_dihedral_angle_1_deg6.548
r_scbond_it4.717
r_scbond_other4.715
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.811
r_dihedral_angle_6_deg14.62
r_dihedral_angle_2_deg12.22
r_lrange_it8.655
r_lrange_other8.641
r_scangle_it7.318
r_scangle_other7.317
r_dihedral_angle_1_deg6.548
r_scbond_it4.717
r_scbond_other4.715
r_mcangle_it4.162
r_mcangle_other4.162
r_mcbond_it2.785
r_mcbond_other2.779
r_angle_refined_deg1.695
r_angle_other_deg0.583
r_symmetry_nbd_other0.376
r_nbd_refined0.215
r_symmetry_xyhbond_nbd_refined0.206
r_xyhbond_nbd_refined0.178
r_nbd_other0.174
r_nbtor_refined0.168
r_symmetry_nbd_refined0.16
r_symmetry_xyhbond_nbd_other0.136
r_symmetry_nbtor_other0.101
r_chiral_restr0.077
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction