14VH | pdb_000014vh

Crystal Structure of FtsZ with F2147-0796


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-279VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6553.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.947α = 90
b = 88.947β = 90
c = 179.833γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-279ftsz-279x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-279SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2791.97744.4731000.1980.2060.0560.9989.513.356119
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2791.9772.0111002.532.630.7170.33413.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.97744.51355989280099.7650.1830.18140.18950.21460.222636.587
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.004-0.002-0.0040.014
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.971
r_dihedral_angle_6_deg14.896
r_lrange_it9.035
r_lrange_other8.98
r_dihedral_angle_2_deg7.839
r_scangle_it7.694
r_scangle_other7.693
r_dihedral_angle_1_deg6.562
r_scbond_it5.062
r_scbond_other5.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.971
r_dihedral_angle_6_deg14.896
r_lrange_it9.035
r_lrange_other8.98
r_dihedral_angle_2_deg7.839
r_scangle_it7.694
r_scangle_other7.693
r_dihedral_angle_1_deg6.562
r_scbond_it5.062
r_scbond_other5.06
r_mcangle_it4.646
r_mcangle_other4.646
r_mcbond_it3.21
r_mcbond_other3.201
r_angle_refined_deg1.694
r_angle_other_deg0.583
r_symmetry_xyhbond_nbd_other0.494
r_symmetry_nbd_other0.419
r_symmetry_xyhbond_nbd_refined0.292
r_symmetry_nbd_refined0.239
r_nbd_refined0.221
r_xyhbond_nbd_refined0.183
r_nbd_other0.175
r_nbtor_refined0.168
r_symmetry_nbtor_other0.121
r_chiral_restr_other0.111
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction