14VE | pdb_000014ve

Crystal Structure of FtsZ with F1294-0176


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-242VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.628α = 90
b = 88.628β = 90
c = 180.048γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-242ftsz-242x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-242SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2422.09644.3141000.3480.3650.1070.9936.411.746829
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2422.0962.1321003.2153.3841.0480.3410.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.09644.35346808239099.910.1850.18330.19060.22290.229433.873
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.001-0.0010.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg14.898
r_dihedral_angle_3_deg14.867
r_dihedral_angle_6_deg14.382
r_lrange_it8.588
r_lrange_other8.499
r_scangle_it6.955
r_scangle_other6.954
r_dihedral_angle_1_deg6.675
r_scbond_it4.487
r_scbond_other4.486
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg14.898
r_dihedral_angle_3_deg14.867
r_dihedral_angle_6_deg14.382
r_lrange_it8.588
r_lrange_other8.499
r_scangle_it6.955
r_scangle_other6.954
r_dihedral_angle_1_deg6.675
r_scbond_it4.487
r_scbond_other4.486
r_mcangle_it4.08
r_mcangle_other4.08
r_mcbond_it2.701
r_mcbond_other2.699
r_angle_refined_deg1.678
r_angle_other_deg0.6
r_symmetry_nbd_other0.548
r_symmetry_nbd_refined0.276
r_symmetry_xyhbond_nbd_other0.274
r_nbd_refined0.218
r_nbd_other0.216
r_xyhbond_nbd_refined0.197
r_nbtor_refined0.168
r_symmetry_xyhbond_nbd_refined0.156
r_symmetry_nbtor_other0.124
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction