14VC | pdb_000014vc

Crystal Structure of FtsZ with F5857-3414


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-225VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.631α = 90
b = 88.631β = 90
c = 178.847γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-225ftsz-225x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-225SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2252.43943.0151000.4570.4760.1290.9876.213.629563
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2252.4392.4811002.6782.7840.7570.36313.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.43943.05229550149999.9360.180.17760.18230.22760.228436.477
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0110.0050.011-0.035
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.879
r_dihedral_angle_6_deg14.536
r_lrange_it9.489
r_lrange_other9.419
r_dihedral_angle_2_deg8.46
r_scangle_it7.662
r_scangle_other7.66
r_dihedral_angle_1_deg6.746
r_mcangle_other5.323
r_mcangle_it5.321
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.879
r_dihedral_angle_6_deg14.536
r_lrange_it9.489
r_lrange_other9.419
r_dihedral_angle_2_deg8.46
r_scangle_it7.662
r_scangle_other7.66
r_dihedral_angle_1_deg6.746
r_mcangle_other5.323
r_mcangle_it5.321
r_scbond_other4.832
r_scbond_it4.83
r_mcbond_it3.41
r_mcbond_other3.404
r_angle_refined_deg1.663
r_angle_other_deg0.576
r_symmetry_nbd_other0.421
r_symmetry_xyhbond_nbd_refined0.225
r_nbd_refined0.217
r_nbd_other0.205
r_symmetry_nbd_refined0.202
r_xyhbond_nbd_refined0.194
r_nbtor_refined0.171
r_symmetry_nbtor_other0.108
r_symmetry_xyhbond_nbd_other0.08
r_chiral_restr0.073
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction