14UW | pdb_000014uw

Crystal Structure of FtsZ with F6666-3016


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-189VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.475α = 90
b = 88.475β = 90
c = 178.651γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-189ftsz-189x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-189SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1891.80444.2371000.1530.1590.0430.99912.513.472520
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1891.8041.8351002.4382.5320.680.34713.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.80444.27772513367699.9560.1840.18260.19090.21430.220230.01
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.009-0.005-0.0090.029
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg15.038
r_dihedral_angle_3_deg14.275
r_lrange_it8.47
r_lrange_other8.44
r_dihedral_angle_2_deg7.683
r_scangle_it7.307
r_scangle_other7.306
r_dihedral_angle_1_deg6.619
r_scbond_it4.768
r_scbond_other4.767
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg15.038
r_dihedral_angle_3_deg14.275
r_lrange_it8.47
r_lrange_other8.44
r_dihedral_angle_2_deg7.683
r_scangle_it7.307
r_scangle_other7.306
r_dihedral_angle_1_deg6.619
r_scbond_it4.768
r_scbond_other4.767
r_mcangle_other4.046
r_mcangle_it4.045
r_mcbond_it2.836
r_mcbond_other2.833
r_angle_refined_deg1.737
r_angle_other_deg0.609
r_symmetry_nbd_other0.493
r_symmetry_xyhbond_nbd_refined0.433
r_nbd_other0.221
r_nbd_refined0.22
r_xyhbond_nbd_refined0.179
r_nbtor_refined0.167
r_symmetry_nbd_refined0.143
r_symmetry_nbtor_other0.122
r_chiral_restr0.083
r_symmetry_xyhbond_nbd_other0.021
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms314
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction